Our Applications
Tools developed and maintained by the UFHCC BCB-SR team for reproducible omics data analysis
DECODeR
Differential Exploration of Counts-based Omics Data in R. Analysis and visualization of counts data derived from bulk RNA-seq or related assays.
HeatPath
Instantly generate gene expression heatmaps from your uploaded RNA-seq counts by searching pathway databases or uploading lists of pathways.
ClusterPicker
Interactively explore and extract feature clusters from heatmaps.
atacreportR
Generate a comprehensive differential analysis and interactive report from the output of nf-core/atacseq or other peak-calling pipelines. This is only available on the UF network. Contact our team for access.
rnareportR
Generate a comprehensive differential analysis and interactive report from the output of nf-core/rnaseq. This is only available on the UF network. Contact our team for access.
Genome Browser Track Maker
Flexibly create and customize genome browser track hubs from any data on HiPerGator. This is only available on the UF network. Contact our team for access.
Project Management Tools
Internal tools for project tracking and workflow management
Getting Help & Ideas
Questions about applications or need analysis support? Have an idea for a new app?
Looking for another app? We also host external applications
External tools hosted locally for enhanced security and performance compared to public servers
Icarus - Single-cell data visualization ExpressAnalyst - Gene expression analysis